Reinharz's
Computational Biology and Evolution lab.
We are in the Department of Computer Science of the Université du Québec à Montréal (
UQAM) and associated with the
LACIM. Our research focuses on Computational Biology and Evolution, particularly the design of new algorithms to study RNA molecules and viral infections.
Hiring
I am looking for students at all levels. Contact me with a cover letter on your background and motivation to pursue research, a CV as well as your transcripts.
I have funded PhD positions available. The project is on new algorithms to study RNA 3D structures.
People
Vladimir Reinharz
Prof.From really close
Wilfried Agbeto
MSc Student (2024)
PhD Student
With Camille Coti
Kobra Amirsardari
PhD Student
Nassir Adekoudjo
MSc Student
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Preprint
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Software and Web servers
- CaRNAval2-alpha
In development, organized collection of RNA Recurrent Interaction Networks (RIN), can annotate any structure file.
- FASTiso (2025)
Fast isomorphism, in C++ and python
- PASIGraph (2025)
Parallel computing of all maximal subgraph isomorphism
- RNA-MoIP2 (2024)
Prediction of local 3D motifs from RNA secondary structure predictions.
- FuzzTree (2023)
Fuzzy maching of subgraphs with explicit controle over insertion, 3D distance, and isostericity
- BayesPairing (2020)
Automatic identification of 3D structural modules in RNA sequences.
- IncaRNAfbinv (2020)
Fragment-based design of RNA sequences.
- CaRNAval (deprecated)
Organized collection of RNA Recurrent Interaction Networks (RIN), can annotate any structure file.
- RNAmigos (2020)
Predict a small molecule binding profile (molecular fingerprint) given an RNA base-pairing pattern.
- RNA-MoIP (deprecated)
Prediction of local 3D motifs from RNA secondary structure predictions.
- aRNhAck (2016)
Prediction of RNA-binding interfaces using SHAPE data and MSA.
- achARNement (2016)
Reconstruction of ancestral RNA sequences under multiple structural constraints.
- IncaRNAtion (2013)
Design of RNA sequences folding into target secondary structures with nucleotide distribution.
- RNApyro (2013)
Error-correction of RNA sequencing data using secondary structure information.
Contact
Email: rna [at] vreinharz.com
Phone: +1 (514) 987-3000 ext.8214
Fax: +1 (514) 987-8477
201, av. Président-Kennedy
Room PK-4320
Mail should be sent to
Département d'informatique
Université du Québec à Montréal
Case postale 8888, Succursale Centre-ville
Montréal (Québec) H3C 3P8 Canada
Alumni
- Roman Sarrazin-Gendron, PhD, 2024
- Gabriel Loyer, MSc, 2023