UQAM · Département d'informatique · LACIM
Reinharz's
Computational Biology
& Evolution Lab
We are in the Department of Computer Science of the Université du Québec à Montréal (UQAM) and associated with the LACIM. Our research focuses on the design of new algorithms and their applications, in particular to study RNA molecules structures and viral infections.
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Publications
Preprints
Publications
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Software & Web Servers
Organized collection of RNA Recurrent Interaction Networks (RIN). Can annotate any structure file.
Fast isomorphism implementation in C++ and Python.
Parallel computing of all maximal subgraph isomorphism.
Prediction of local 3D motifs from RNA secondary structure predictions.
Fuzzy matching of subgraphs with explicit control over insertion, 3D distance, and isostericity.
Automatic identification of 3D structural modules in RNA sequences.
Fragment-based design of RNA sequences.
Predict a small molecule binding profile given an RNA base-pairing pattern.
Prediction of RNA-binding interfaces using SHAPE data and MSA.
Reconstruction of ancestral RNA sequences under multiple structural constraints.
Design of RNA sequences folding into target secondary structures with nucleotide distribution.
Error-correction of RNA sequencing data using secondary structure information.
Original collection of RNA Recurrent Interaction Networks.
Prediction of local 3D motifs from RNA secondary structure predictions.
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Contact
Mailing Address
Université du Québec à Montréal
Case postale 8888, Succursale Centre-ville
Montréal (Québec) H3C 3P8, Canada