Reinharz's
Computational Biology and Evolution lab.
We are in the Department of Computer Science of the Université du Québec à Montréal (
UQAM) and associated with the
LACIM. Our research focuses on Computational Biology and Evolution, particularly the design of new algorithms to study RNA molecules and viral infections.
Hiring
I am looking for students at all levels. Contact me with a cover letter on your background and motivation to pursue research, a CV as well as your transcripts.
I have funded PhD positions available. The project is on new algorithms to study RNA 3D structures.
People
Vladimir Reinharz
Prof.From really close
Wilfried Agbeto
MSc Student (2024)
PhD Student
With Camille Coti
Kobra Amirsardari
PhD Student
Nassir Adekoudjo
MSc Student
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Softwares and Web servers
- CaRNAval
Organized collection of RNA Recurrent Interaction Networks (RIN), can annotate any structure file.
- RNAmigos
Predict a small molecule binding profile (molecular fingerprint) given an RNA base-pairing pattern.
- BayesPairing
Automatic identification of 3D structural modules in RNA sequences.
- RNA-MoIP
Prediction of local 3D motifs from RNA secondary structure predictions.
- aRNhAck
Prediction of RNA-binding interfaces using SHAPE data and MSA.
- IncaRNAtion
Design of RNA sequences folding into target secondary structures with nucleotide distribution.
- achARNement
Reconstruction of ancestral RNA sequences under multiple structural constraints.
- RNApyro
Error-correction of RNA sequencing data using secondary structure information.
- IncaRNAfbinv
Fragment-based design of RNA sequences.
Contact
reinharz.vladimir [at] uqam.ca
Phone: +1 (514) 987-3000 ext.8214
Fax: +1 (514) 987-8477
201, av. Président-Kennedy
Room PK-4320
Mail should be sent to
Département d'informatique
Université du Québec à Montréal
Case postale 8888, Succursale Centre-ville
Montréal (Québec) H3C 3P8 Canada
Alumni
- Roman Sarrazin-Gendron, PhD, 2024
- Gabriel Loyer, MSc, 2023