Reinharz's
Computational Biology and Evolution lab.

Softwares and Web servers

• CaRNAval
  Organized collection of RNA Recurrent Interaction Networks (RIN), can annotate any structure file.
• RNAmigos
  Predict a small molecule binding profile (molecular fingerprint) given an RNA base-pairing pattern.
• BayesPairing
  Automatic identification of 3D structural modules in RNA sequences.
• RNA-MoIP
  Prediction of local 3D motifs from RNA secondary structure predictions.
• aRNhAck
  Prediction of RNA-binding interfaces using SHAPE data and MSA.
• IncaRNAtion
  Design of RNA sequences folding into target secondary structures with nucleotide distribution.
• achARNement
  Reconstruction of ancestral RNA sequences under multiple structural constraints.
• RNApyro
  Error-correction of RNA sequencing data using secondary structure information.
• IncaRNAfbinv
  Fragment-based design of RNA sequences.